skorch.net¶

Neural net base class

This is the most flexible class, not making assumptions on the kind of task being peformed. Subclass this to create more specialized and sklearn-conforming classes like NeuralNetClassifier.

class skorch.net.NeuralNet(module, criterion, optimizer=<class 'torch.optim.sgd.SGD'>, lr=0.01, max_epochs=10, batch_size=128, iterator_train=<class 'torch.utils.data.dataloader.DataLoader'>, iterator_valid=<class 'torch.utils.data.dataloader.DataLoader'>, dataset=<class 'skorch.dataset.Dataset'>, train_split=<skorch.dataset.ValidSplit object>, callbacks=None, predict_nonlinearity='auto', warm_start=False, verbose=1, device='cpu', **kwargs)[source]¶

NeuralNet base class.

The base class covers more generic cases. Depending on your use case, you might want to use NeuralNetClassifier or NeuralNetRegressor.

In addition to the parameters listed below, there are parameters with specific prefixes that are handled separately. To illustrate this, here is an example:

>>> net = NeuralNet(
...    ...,
...    optimizer=torch.optimizer.SGD,
...    optimizer__momentum=0.95,
...)

This way, when optimizer is initialized, NeuralNet will take care of setting the momentum parameter to 0.95.

(Note that the double underscore notation in optimizer__momentum means that the parameter momentum should be set on the object optimizer. This is the same semantic as used by sklearn.)

Furthermore, this allows to change those parameters later:

net.set_params(optimizer__momentum=0.99)

This can be useful when you want to change certain parameters using a callback, when using the net in an sklearn grid search, etc.

By default an EpochTimer, BatchScoring (for both training and validation datasets), and PrintLog callbacks are added for convenience.

Parameters:

module : torch module (class or instance)

A PyTorch Module. In general, the uninstantiated class should be passed, although instantiated modules will also work.

criterion : torch criterion (class)

The uninitialized criterion (loss) used to optimize the module.

optimizer : torch optim (class, default=torch.optim.SGD)

The uninitialized optimizer (update rule) used to optimize the module

lr : float (default=0.01)

Learning rate passed to the optimizer. You may use lr instead of using optimizer__lr, which would result in the same outcome.

max_epochs : int (default=10)

The number of epochs to train for each fit call. Note that you may keyboard-interrupt training at any time.

batch_size : int (default=128)

Mini-batch size. Use this instead of setting iterator_train__batch_size and iterator_test__batch_size, which would result in the same outcome. If batch_size is -1, a single batch with all the data will be used during training and validation.

iterator_train : torch DataLoader

The default PyTorch DataLoader used for training data.

iterator_valid : torch DataLoader

The default PyTorch DataLoader used for validation and test data, i.e. during inference.

dataset : torch Dataset (default=skorch.dataset.Dataset)

The dataset is necessary for the incoming data to work with pytorch’s DataLoader. It has to implement the __len__ and __getitem__ methods. The provided dataset should be capable of dealing with a lot of data types out of the box, so only change this if your data is not supported. You should generally pass the uninitialized Dataset class and define additional arguments to X and y by prefixing them with dataset__. It is also possible to pass an initialzed Dataset, in which case no additional arguments may be passed.

train_split : None or callable (default=skorch.dataset.ValidSplit(5))

If None, there is no train/validation split. Else, train_split should be a function or callable that is called with X and y data and should return the tuple dataset_train, dataset_valid. The validation data may be None.

callbacks : None, “disable”, or list of Callback instances (default=None)

Which callbacks to enable. There are three possible values:

If callbacks=None, only use default callbacks, those returned by get_default_callbacks.

If callbacks="disable", disable all callbacks, i.e. do not run any of the callbacks, not even the default callbacks.

If callbacks is a list of callbacks, use those callbacks in addition to the default callbacks. Each callback should be an instance of Callback.

Callback names are inferred from the class name. Name conflicts are resolved by appending a count suffix starting with 1, e.g. EpochScoring_1. Alternatively, a tuple (name, callback) can be passed, where name should be unique. Callbacks may or may not be instantiated. The callback name can be used to set parameters on specific callbacks (e.g., for the callback with name 'print_log', use net.set_params(callbacks__print_log__keys_ignored=['epoch', 'train_loss'])).

predict_nonlinearity : callable, None, or ‘auto’ (default=’auto’)

The nonlinearity to be applied to the prediction. When set to ‘auto’, infers the correct nonlinearity based on the criterion (softmax for CrossEntropyLoss and sigmoid for BCEWithLogitsLoss). If it cannot be inferred or if the parameter is None, just use the identity function. Don’t pass a lambda function if you want the net to be pickleable.

In case a callable is passed, it should accept the output of the module (the first output if there is more than one), which is a PyTorch tensor, and return the transformed PyTorch tensor.

This can be useful, e.g., when predict_proba() should return probabilities but a criterion is used that does not expect probabilities. In that case, the module can return whatever is required by the criterion and the predict_nonlinearity transforms this output into probabilities.

The nonlinearity is applied only when calling predict() or predict_proba() but not anywhere else – notably, the loss is unaffected by this nonlinearity.

warm_start : bool (default=False)

Whether each fit call should lead to a re-initialization of the module (cold start) or whether the module should be trained further (warm start).

verbose : int (default=1)

This parameter controls how much print output is generated by the net and its callbacks. By setting this value to 0, e.g. the summary scores at the end of each epoch are no longer printed. This can be useful when running a hyperparameter search. The summary scores are always logged in the history attribute, regardless of the verbose setting.

device : str, torch.device, or None (default=’cpu’)

The compute device to be used. If set to ‘cuda’ in order to use GPU acceleration, data in torch tensors will be pushed to cuda tensors before being sent to the module. If set to None, then all compute devices will be left unmodified.

Attributes:

prefixes_ : list of str: Contains the prefixes to special parameters. E.g., since there is the 'module' prefix, it is possible to set parameters like so: NeuralNet(..., optimizer__momentum=0.95).
cuda_dependent_attributes_ : list of str: Contains a list of all attribute prefixes whose values depend on a CUDA device. If a NeuralNet trained with a CUDA-enabled device is unpickled on a machine without CUDA or with CUDA disabled, the listed attributes are mapped to CPU. Expand this list if you want to add other cuda-dependent attributes.
initialized_ : bool: Whether the NeuralNet was initialized.
module_ : torch module (instance): The instantiated module.
criterion_ : torch criterion (instance): The instantiated criterion.
callbacks_ : list of tuples: The complete (i.e. default and other), initialized callbacks, in a tuple with unique names.
_modules : list of str: List of names of all modules that are torch modules. This list is collected dynamically when the net is initialized. Typically, there is no reason for a user to modify this list.
_criteria : list of str: List of names of all criteria that are torch modules. This list is collected dynamically when the net is initialized. Typically, there is no reason for a user to modify this list.
_optimizers : list of str: List of names of all optimizers. This list is collected dynamically when the net is initialized. Typically, there is no reason for a user to modify this list.

Methods

`check_is_fitted`([attributes])	Checks whether the net is initialized
`check_training_readiness`()	Check that the net is ready to train
`evaluation_step`(batch[, training])	Perform a forward step to produce the output used for prediction and scoring.
`fit`(X[, y])	Initialize and fit the module.
`fit_loop`(X[, y, epochs])	The proper fit loop.
`forward`(X[, training, device])	Gather and concatenate the output from forward call with input data.
`forward_iter`(X[, training, device])	Yield outputs of module forward calls on each batch of data.
`get_all_learnable_params`()	Yield the learnable parameters of all modules
`get_dataset`(X[, y])	Get a dataset that contains the input data and is passed to the iterator.
`get_iterator`(dataset[, training])	Get an iterator that allows to loop over the batches of the given data.
`get_loss`(y_pred, y_true[, X, training])	Return the loss for this batch.
`get_params_for`(prefix)	Collect and return init parameters for an attribute.
`get_params_for_optimizer`(prefix, …)	Collect and return init parameters for an optimizer.
`get_split_datasets`(X[, y])	Get internal train and validation datasets.
`get_train_step_accumulator`()	Return the train step accumulator.
`infer`(x, **fit_params)	Perform a single inference step on a batch of data.
`initialize`()	Initializes all of its components and returns self.
`initialize_callbacks`()	Initializes all callbacks and save the result in the `callbacks_` attribute.
`initialize_criterion`()	Initializes the criterion.
`initialize_history`()	Initializes the history.
`initialize_module`()	Initializes the module.
`initialize_optimizer`([triggered_directly])	Initialize the model optimizer.
`initialized_instance`(instance_or_cls, kwargs)	Return an instance initialized with the given parameters
`load_params`([f_params, f_optimizer, …])	Loads the the module’s parameters, history, and optimizer, not the whole object.
`notify`(method_name, **cb_kwargs)	Call the callback method specified in `method_name` with parameters specified in `cb_kwargs`.
`on_batch_begin`(net[, batch, training])
`on_epoch_begin`(net[, dataset_train, …])
`on_epoch_end`(net[, dataset_train, dataset_valid])
`on_train_begin`(net[, X, y])
`on_train_end`(net[, X, y])
`partial_fit`(X[, y, classes])	Fit the module.
`predict`(X)	Where applicable, return class labels for samples in X.
`predict_proba`(X)	Return the output of the module’s forward method as a numpy array.
`run_single_epoch`(iterator, training, prefix, …)	Compute a single epoch of train or validation.
`save_params`([f_params, f_optimizer, …])	Saves the module’s parameters, history, and optimizer, not the whole object.
`set_params`(**kwargs)	Set the parameters of this class.
`train_step`(batch, **fit_params)	Prepares a loss function callable and pass it to the optimizer, hence performing one optimization step.
`train_step_single`(batch, **fit_params)	Compute y_pred, loss value, and update net’s gradients.
`trim_for_prediction`()	Remove all attributes not required for prediction.
`validation_step`(batch, **fit_params)	Perform a forward step using batched data and return the resulting loss.

check_data
get_default_callbacks
get_params
initialize_virtual_params
on_batch_end
on_grad_computed

check_is_fitted(attributes=None, *args, **kwargs)[source]¶

Checks whether the net is initialized

Parameters:	attributes : iterable of str or None (default=None) All the attributes that are strictly required of a fitted net. By default, this is the module_ attribute. Other arguments as in ``sklearn.utils.validation.check_is_fitted``.
Raises:	skorch.exceptions.NotInitializedError When the given attributes are not present.

check_training_readiness()[source]¶: Check that the net is ready to train

evaluation_step(batch, training=False)[source]¶

Perform a forward step to produce the output used for prediction and scoring.

Therefore, the module is set to evaluation mode by default beforehand which can be overridden to re-enable features like dropout by setting training=True.

Parameters:	batch A single batch returned by the data loader. training : bool (default=False) Whether to set the module to train mode or not.
Returns:	y_infer The prediction generated by the module.

fit(X, y=None, **fit_params)[source]¶

Initialize and fit the module.

If the module was already initialized, by calling fit, the module will be re-initialized (unless warm_start is True).

Parameters:

X : input data, compatible with skorch.dataset.Dataset

By default, you should be able to pass:

numpy arrays

torch tensors

pandas DataFrame or Series

scipy sparse CSR matrices

a dictionary of the former three

a list/tuple of the former three

a Dataset

If this doesn’t work with your data, you have to pass a Dataset that can deal with the data.

y : target data, compatible with skorch.dataset.Dataset

The same data types as for X are supported. If your X is a Dataset that contains the target, y may be set to None.

**fit_params : dict

Additional parameters passed to the forward method of the module and to the self.train_split call.

fit_loop(X, y=None, epochs=None, **fit_params)[source]¶

The proper fit loop.

Contains the logic of what actually happens during the fit loop.

Parameters:

X : input data, compatible with skorch.dataset.Dataset

By default, you should be able to pass:

numpy arrays

torch tensors

pandas DataFrame or Series

scipy sparse CSR matrices

a dictionary of the former three

a list/tuple of the former three

a Dataset

If this doesn’t work with your data, you have to pass a Dataset that can deal with the data.

y : target data, compatible with skorch.dataset.Dataset

The same data types as for X are supported. If your X is a Dataset that contains the target, y may be set to None.

epochs : int or None (default=None)

If int, train for this number of epochs; if None, use self.max_epochs.

**fit_params : dict

Additional parameters passed to the forward method of the module and to the self.train_split call.

forward(X, training=False, device='cpu')[source]¶

Gather and concatenate the output from forward call with input data.

The outputs from self.module_.forward are gathered on the compute device specified by device and then concatenated using PyTorch cat(). If multiple outputs are returned by self.module_.forward, each one of them must be able to be concatenated this way.

Parameters:

X : input data, compatible with skorch.dataset.Dataset

By default, you should be able to pass:

numpy arrays

torch tensors

pandas DataFrame or Series

scipy sparse CSR matrices

a dictionary of the former three

a list/tuple of the former three

a Dataset

If this doesn’t work with your data, you have to pass a Dataset that can deal with the data.

training : bool (default=False)

Whether to set the module to train mode or not.

device : string (default=’cpu’)

The device to store each inference result on. This defaults to CPU memory since there is genereally more memory available there. For performance reasons this might be changed to a specific CUDA device, e.g. ‘cuda:0’.

Returns:

y_infer : torch tensor: The result from the forward step.

forward_iter(X, training=False, device='cpu')[source]¶

Yield outputs of module forward calls on each batch of data. The storage device of the yielded tensors is determined by the device parameter.

Parameters:

X : input data, compatible with skorch.dataset.Dataset

By default, you should be able to pass:

numpy arrays

torch tensors

pandas DataFrame or Series

scipy sparse CSR matrices

a dictionary of the former three

a list/tuple of the former three

a Dataset

If this doesn’t work with your data, you have to pass a Dataset that can deal with the data.

training : bool (default=False)

Whether to set the module to train mode or not.

device : string (default=’cpu’)

The device to store each inference result on. This defaults to CPU memory since there is genereally more memory available there. For performance reasons this might be changed to a specific CUDA device, e.g. ‘cuda:0’.

Yields:

yp : torch tensor: Result from a forward call on an individual batch.

get_all_learnable_params()[source]¶

Yield the learnable parameters of all modules

Typically, this will yield the named_parameters of the standard module of the net. However, if you add custom modules or if your criterion has learnable parameters, these are returned as well.

If you want your optimizer to only update the parameters of some but not all modules, you should override initialize_module() and match the corresponding modules and optimizers there:

class MyNet(NeuralNet):

    def initialize_optimizer(self, *args, **kwargs):
        # first initialize the normal optimizer
        named_params = self.module_.named_parameters()
        args, kwargs = self.get_params_for_optimizer('optimizer', named_params)
        self.optimizer_ = self.optimizer(*args, **kwargs)

        # next add an another optimizer called 'optimizer2_' that is
        # only responsible for training 'module2_'
        named_params = self.module2_.named_parameters()
        args, kwargs = self.get_params_for_optimizer('optimizer2', named_params)
        self.optimizer2_ = torch.optim.SGD(*args, **kwargs)
        return self

Yields:	named_parameters : generator of parameter name and parameter A generator over all module parameters, yielding both the name of the parameter as well as the parameter itself. Use this, for instance, to pass the named parameters to `get_params_for_optimizer()`.

get_dataset(X, y=None)[source]¶

Get a dataset that contains the input data and is passed to the iterator.

Override this if you want to initialize your dataset differently.

Parameters:

X : input data, compatible with skorch.dataset.Dataset

By default, you should be able to pass:

numpy arrays

torch tensors

pandas DataFrame or Series

scipy sparse CSR matrices

a dictionary of the former three

a list/tuple of the former three

a Dataset

If this doesn’t work with your data, you have to pass a Dataset that can deal with the data.

y : target data, compatible with skorch.dataset.Dataset

The same data types as for X are supported. If your X is a Dataset that contains the target, y may be set to None.

Returns:

dataset: The initialized dataset.

get_iterator(dataset, training=False)[source]¶

Get an iterator that allows to loop over the batches of the given data.

If self.iterator_train__batch_size and/or self.iterator_test__batch_size are not set, use self.batch_size instead.

Parameters:	dataset : torch Dataset (default=skorch.dataset.Dataset) Usually, `self.dataset`, initialized with the corresponding data, is passed to `get_iterator`. training : bool (default=False) Whether to use `iterator_train` or `iterator_test`.
Returns:	iterator An instantiated iterator that allows to loop over the mini-batches.

get_loss(y_pred, y_true, X=None, training=False)[source]¶

Return the loss for this batch.

Parameters:

y_pred : torch tensor

Predicted target values

y_true : torch tensor

True target values.

X : input data, compatible with skorch.dataset.Dataset

By default, you should be able to pass:

numpy arrays

torch tensors

pandas DataFrame or Series

scipy sparse CSR matrices

a dictionary of the former three

a list/tuple of the former three

a Dataset

If this doesn’t work with your data, you have to pass a Dataset that can deal with the data.

training : bool (default=False)

Whether train mode should be used or not.

get_params_for(prefix)[source]¶

Collect and return init parameters for an attribute.

Attributes could be, for instance, pytorch modules, criteria, or data loaders (for optimizers, use get_params_for_optimizer() instead). Use the returned arguments to initialize the given attribute like this:

# inside initialize_module method
kwargs = self.get_params_for('module')
self.module_ = self.module(**kwargs)

Proceed analogously for the criterion etc.

The reason to use this method is so that it’s possible to change the init parameters with set_params(), which in turn makes grid search and other similar things work.

Note that in general, as a user, you never have to deal with this method because initialize_module() etc. are already taking care of this. You only need to deal with this if you override initialize_module() (or similar methods) because you have some custom code that requires it.

Parameters:	prefix : str The name of the attribute whose arguments should be returned. E.g. for the module, it should be `'module'`.
Returns:	kwargs : dict Keyword arguments to be used as init parameters.

get_params_for_optimizer(prefix, named_parameters)[source]¶

Collect and return init parameters for an optimizer.

Parse kwargs configuration for the optimizer identified by the given prefix. Supports param group assignment using wildcards:

optimizer__lr=0.05,
optimizer__param_groups=[
    ('rnn*.period', {'lr': 0.3, 'momentum': 0}),
    ('rnn0', {'lr': 0.1}),
]

Generally, use this method like this:

# inside initialize_optimizer method
named_params = self.module_.named_parameters()
pgroups, kwargs = self.get_params_for_optimizer('optimizer', named_params)
if 'lr' not in kwargs:
    kwargs['lr'] = self.lr
self.optimizer_ = self.optimizer(*pgroups, **kwargs)

The reason to use this method is so that it’s possible to change the init parameters with set_params(), which in turn makes grid search and other similar things work.

Note that in general, as a user, you never have to deal with this method because initialize_optimizer() is already taking care of this. You only need to deal with this if you override initialize_optimizer() because you have some custom code that requires it.

Parameters:	prefix : str The name of the optimizer whose arguments should be returned. Typically, this should just be `'optimizer'`. There can be exceptions, however, e.g. if you want to use more than one optimizer. named_parameters : iterator Iterator over the parameters of the module that is intended to be optimized. It’s the return value of `my_module.named_parameters()`.
Returns:	args : tuple All positional arguments for this optimizer (right now only one, the parameter groups). kwargs : dict All other parameters for this optimizer, e.g. the learning rate.

get_split_datasets(X, y=None, **fit_params)[source]¶

Get internal train and validation datasets.

The validation dataset can be None if self.train_split is set to None; then internal validation will be skipped.

Override this if you want to change how the net splits incoming data into train and validation part.

Parameters:

X : input data, compatible with skorch.dataset.Dataset

By default, you should be able to pass:

numpy arrays

torch tensors

pandas DataFrame or Series

scipy sparse CSR matrices

a dictionary of the former three

a list/tuple of the former three

a Dataset

If this doesn’t work with your data, you have to pass a Dataset that can deal with the data.

y : target data, compatible with skorch.dataset.Dataset

The same data types as for X are supported. If your X is a Dataset that contains the target, y may be set to None.

**fit_params : dict

Additional parameters passed to the self.train_split call.

Returns:

dataset_train: The initialized training dataset.
dataset_valid: The initialized validation dataset or None

get_train_step_accumulator()[source]¶

Return the train step accumulator.

By default, the accumulator stores and retrieves the first value from the optimizer call. Most optimizers make only one call, so first value is at the same time the only value.

In case of some optimizers, e.g. LBFGS, train_step_calc_gradient is called multiple times, as the loss function is evaluated multiple times per optimizer call. If you don’t want to return the first value in that case, override this method to return your custom accumulator.

infer(x, **fit_params)[source]¶

Perform a single inference step on a batch of data.

Parameters:	x : input data A batch of the input data. **fit_params : dict Additional parameters passed to the `forward` method of the module and to the `self.train_split` call.

initialize()[source]¶: Initializes all of its components and returns self.

initialize_callbacks()[source]¶

Initializes all callbacks and save the result in the callbacks_ attribute.

Both default_callbacks and callbacks are used (in that order). Callbacks may either be initialized or not, and if they don’t have a name, the name is inferred from the class name. The initialize method is called on all callbacks.

The final result will be a list of tuples, where each tuple consists of a name and an initialized callback. If names are not unique, a ValueError is raised.

initialize_criterion()[source]¶

Initializes the criterion.

If the criterion is already initialized and no parameter was changed, it will be left as is.

initialize_history()[source]¶: Initializes the history.

initialize_module()[source]¶

Initializes the module.

If the module is already initialized and no parameter was changed, it will be left as is.

initialize_optimizer(triggered_directly=None)[source]¶

Initialize the model optimizer. If self.optimizer__lr is not set, use self.lr instead.

Parameters:	triggered_directly Deprecated, don’t use it anymore.

initialized_instance(instance_or_cls, kwargs)[source]¶

Return an instance initialized with the given parameters

This is a helper method that deals with several possibilities for a component that might need to be initialized:

It is already an instance that’s good to go
It is an instance but it needs to be re-initialized
It’s not an instance and needs to be initialized

For the majority of use cases, this comes down to just comes down to just initializing the class with its arguments.

Parameters:	instance_or_cls The instance or class or callable to be initialized, e.g. `self.module`. kwargs : dict The keyword arguments to initialize the instance or class. Can be an empty dict.
Returns:	instance The initialized component.

load_params(f_params=None, f_optimizer=None, f_criterion=None, f_history=None, checkpoint=None, **kwargs)[source]¶

Loads the the module’s parameters, history, and optimizer, not the whole object.

To save and load the whole object, use pickle.

f_params, f_optimizer, etc. uses PyTorch’s load().

If you’ve created a custom module, e.g. net.mymodule_, you can save that as well by passing f_mymodule.

Parameters:

f_params : file-like object, str, None (default=None): Path of module parameters. Pass None to not load.
f_optimizer : file-like object, str, None (default=None): Path of optimizer. Pass None to not load.
f_criterion : file-like object, str, None (default=None): Path of criterion. Pass None to not save
f_history : file-like object, str, None (default=None): Path to history. Pass None to not load.
checkpoint : Checkpoint, None (default=None): Checkpoint to load params from. If a checkpoint and a f_* path is passed in, the f_* will be loaded. Pass None to not load.

Examples

>>> before = NeuralNetClassifier(mymodule)
>>> before.save_params(f_params='model.pkl',
>>>                    f_optimizer='optimizer.pkl',
>>>                    f_history='history.json')
>>> after = NeuralNetClassifier(mymodule).initialize()
>>> after.load_params(f_params='model.pkl',
>>>                   f_optimizer='optimizer.pkl',
>>>                   f_history='history.json')

notify(method_name, **cb_kwargs)[source]¶

Call the callback method specified in method_name with parameters specified in cb_kwargs.

Method names can be one of: * on_train_begin * on_train_end * on_epoch_begin * on_epoch_end * on_batch_begin * on_batch_end

partial_fit(X, y=None, classes=None, **fit_params)[source]¶

Fit the module.

If the module is initialized, it is not re-initialized, which means that this method should be used if you want to continue training a model (warm start).

Parameters:

X : input data, compatible with skorch.dataset.Dataset

By default, you should be able to pass:

numpy arrays

torch tensors

pandas DataFrame or Series

scipy sparse CSR matrices

a dictionary of the former three

a list/tuple of the former three

a Dataset

If this doesn’t work with your data, you have to pass a Dataset that can deal with the data.

y : target data, compatible with skorch.dataset.Dataset

The same data types as for X are supported. If your X is a Dataset that contains the target, y may be set to None.

classes : array, sahpe (n_classes,)

Solely for sklearn compatibility, currently unused.

**fit_params : dict

Additional parameters passed to the forward method of the module and to the self.train_split call.

predict(X)[source]¶

Where applicable, return class labels for samples in X.

If the module’s forward method returns multiple outputs as a tuple, it is assumed that the first output contains the relevant information and the other values are ignored. If all values are relevant, consider using forward() instead.

Parameters:	X : input data, compatible with skorch.dataset.Dataset By default, you should be able to pass: numpy arrays torch tensors pandas DataFrame or Series scipy sparse CSR matrices a dictionary of the former three a list/tuple of the former three a Dataset If this doesn’t work with your data, you have to pass a `Dataset` that can deal with the data.
Returns:	y_pred : numpy ndarray

predict_proba(X)[source]¶

Return the output of the module’s forward method as a numpy array.

If the module’s forward method returns multiple outputs as a tuple, it is assumed that the first output contains the relevant information and the other values are ignored. If all values are relevant, consider using forward() instead.

Parameters:	X : input data, compatible with skorch.dataset.Dataset By default, you should be able to pass: numpy arrays torch tensors pandas DataFrame or Series scipy sparse CSR matrices a dictionary of the former three a list/tuple of the former three a Dataset If this doesn’t work with your data, you have to pass a `Dataset` that can deal with the data.
Returns:	y_proba : numpy ndarray

run_single_epoch(iterator, training, prefix, step_fn, **fit_params)[source]¶

Compute a single epoch of train or validation.

Parameters:	iterator : torch DataLoader or None The initialized `DataLoader` to loop over. If None, skip this step. training : bool Whether to set the module to train mode or not. prefix : str Prefix to use when saving to the history. step_fn : callable Function to call for each batch. **fit_params : dict Additional parameters passed to the `step_fn`.

save_params(f_params=None, f_optimizer=None, f_criterion=None, f_history=None, **kwargs)[source]¶

Saves the module’s parameters, history, and optimizer, not the whole object.

To save the whole object, use pickle. This is necessary when you need additional learned attributes on the net, e.g. the classes_ attribute on skorch.classifier.NeuralNetClassifier.

f_params, f_optimizer, etc. use PyTorch’s save().

If you’ve created a custom module, e.g. net.mymodule_, you can save that as well by passing f_mymodule.

Parameters:

f_params : file-like object, str, None (default=None): Path of module parameters. Pass None to not save
f_optimizer : file-like object, str, None (default=None): Path of optimizer. Pass None to not save
f_criterion : file-like object, str, None (default=None): Path of criterion. Pass None to not save
f_history : file-like object, str, None (default=None): Path to history. Pass None to not save

Examples

>>> before = NeuralNetClassifier(mymodule)
>>> before.save_params(f_params='model.pkl',
...                    f_optimizer='optimizer.pkl',
...                    f_history='history.json')
>>> after = NeuralNetClassifier(mymodule).initialize()
>>> after.load_params(f_params='model.pkl',
...                   f_optimizer='optimizer.pkl',
...                   f_history='history.json')

set_params(**kwargs)[source]¶

Set the parameters of this class.

Valid parameter keys can be listed with get_params().

Returns:	self

train_step(batch, **fit_params)[source]¶

Prepares a loss function callable and pass it to the optimizer, hence performing one optimization step.

Loss function callable as required by some optimizers (and accepted by all of them): https://pytorch.org/docs/master/optim.html#optimizer-step-closure

The module is set to be in train mode (e.g. dropout is applied).

Parameters:	batch A single batch returned by the data loader. **fit_params : dict Additional parameters passed to the `forward` method of the module and to the train_split call.
Returns:	step : dict A dictionary `{'loss': loss, 'y_pred': y_pred}`, where the float `loss` is the result of the loss function and `y_pred` the prediction generated by the PyTorch module.

train_step_single(batch, **fit_params)[source]¶

Compute y_pred, loss value, and update net’s gradients.

The module is set to be in train mode (e.g. dropout is applied).

Parameters:	batch A single batch returned by the data loader. **fit_params : dict Additional parameters passed to the `forward` method of the module and to the `self.train_split` call.
Returns:	step : dict A dictionary `{'loss': loss, 'y_pred': y_pred}`, where the float `loss` is the result of the loss function and `y_pred` the prediction generated by the PyTorch module.

trim_for_prediction()[source]¶

Remove all attributes not required for prediction.

Use this method after you finished training your net, with the goal of reducing its size. All attributes only required during training (e.g. the optimizer) are set to None. This can lead to a considerable decrease in memory footprint. It also makes it more likely that the net can be loaded with different library versions.

After calling this function, the net can only be used for prediction (e.g. net.predict or net.predict_proba) but no longer for training (e.g. net.fit(X, y) will raise an exception).

This operation is irreversible. Once the net has been trimmed for prediction, it is no longer possible to restore the original state. Morevoer, this operation mutates the net. If you need the unmodified net, create a deepcopy before trimming:

from copy import deepcopy
net = NeuralNet(...)
net.fit(X, y)
# training finished
net_original = deepcopy(net)
net.trim_for_prediction()
net.predict(X)

validation_step(batch, **fit_params)[source]¶

Perform a forward step using batched data and return the resulting loss.

The module is set to be in evaluation mode (e.g. dropout is not applied).

Parameters:	batch A single batch returned by the data loader. **fit_params : dict Additional parameters passed to the `forward` method of the module and to the `self.train_split` call.